Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015857740.1_cds_XP_016513524.1_26057
CDS Infomation

[gene=LOC107830472] [db_xref=GeneID:107830472] [protein=katanin p60 ATPase-containing subunit A1-like isoform X4] [protein_id=XP_016513524.1] [location=complement(join(58736..59017,60121..60208,60318..60470,61318..61562,62264..62455,62799..62960,63088..63405,63990..64322))] [gbkey=CDS]
Sequence

ATGGTGGCGGTGGCTCCTAATTCTAATTGTAGCAGAGATGAGAAGATGAAGAAAATCTTC
GACAAGTTCGACGTTAACAAAGATGGCCATCTCGACATGACGGAGCTGGTGGAATGGGTC
AAGGCTTTAGAACCCGAATTGAATAACAATGTGCAGAGCATTCAGTTCAAACTTTCAAGC
TTCCTCACCCCCAATTACTACGCTGTCCTAGCTGGTAATGTTAGCCTAAACTATATTGGC
TTCACCCGCATTTATGCTCAAGGTTTTCGTAACGTTGATCATGACTTCAACTCCCTCGGT
CTCCAATTTCAACCCAATTCTGCAATTCAGCAGGTTCAGGCGACGCCACAAATATCGAAC
CAAGTTCAGGCAATGACACAAGTGTCTAATCAAGTTCAGGCAACGGCACAAGTGTCTAAC
CAAGTTCAGGCGACGCCACCAGTACCCAACCAAGTTCAGGCAACGGCACAAGTGTCTAAC
CAAGTTCAGGCGACGCCACCAGTATCCAACCAAGTTCAGGCAACGGCACAAATATCTAAC
CAAGTTCAGGCAATGACACAAATGTCTAACCAAGTTCAGGCAGCAACGCGATTATCTCAA
CTTCAGGCTACCCAAGGTCGGTTAATGACACAATTATCTAACCAAGTTCAGGGGGGAAGC
TACAGTTTTGCTGGGCAGGTGAATAATTACAGAAACACACTGCAACAAGCGATACCAACA
CTGAATAATTGCAGAAACACAGTGCAACAAGGGGTACAAACACCTCAGCTGCCTGGGCAG
GTGAACAATTATAGAAACACAGTGCAACAAGTGAATGCTGTAGCTGGCGTTAAGCCAAAA
GGAGAGTATAACGGGCCTGATCCCCAACTGGCTGCTAGTCTTGAAAAAGAAATATTGGAT
ACTACTCCAGGGGTGAGATGGGATGATGTTGCGGGACTAAATGAAGCAAAGAGGCTTCTA
CAGGAAGCAGTGGTACTCCCACTGTGGATGCCTGAATACTTCCAGGGAATCAGGAGACCT
TGGAGAGGAGTTCTTATGTTTGGTCCTCCTGGCACAGGGAAAACACTCTTGGCCAAAGCT
GTTGCTACAGAGTGTGGGACAACATTTCTGAATGTTTCTTGCTCTTCGTTGTTGGCAAAA
TTGTATGGGGAGAGTGAACGACGGGTACGGTGCTTGTTTGATCTTGCTCGTGCTCGTGCT
CCAAGTACAATTTTTATTGATGAGATTGATTCTCTTTGTAGTGCCAGAGGGGCTCCTGGA
GAGAATGAAGTATCCCGAAGGGTGAAGTCTGAACTTCTAGTTCAGATTGATGGGTTAAAC
AACTCCACTAATAATATAGCAGGCAAACCGGTCACAGTTTTGGCAGCAACAAATTTCCCC
TGGGGTCTTGATGAGGCACTAAGGAGGCGGCTAGAAAAGCGGATTTACATCCCACTTCCT
GATTTTAAGAGCCGTAAGGAGCTTATAAAGATAAACTTGATATCAATCACGTTAGCTCCT
GACCTGGATATTGACCAAGTGGCACGAAGAACAGAAGGTTTCAGTGGAGACGATCTAACA
AATATCTGCAGAGATGCTTCTTTAAGCGGCATGAGACGTAAGATAGCAGGGAAAAACCCA
GATGAGATTAAGAACATGTCCAAGGCTGAGATTTTGAAAATTCCAGTTATGATGGATGAC
TTCCTAGAAGCTTTAGATAAAATACAACCCACAGTTTCTGCAGTGGACATTGAACGACAC
GAGAAATGGTTTTCAGAATTTGGATCAACGTAG

Peptide Sequence

PEP ID

XP_016513524.1
PEP Infomation

PREDICTED: katanin p60 ATPase-containing subunit A1-like isoform X4 [Nicotiana tabacum]
Sequence

MVAVAPNSNCSRDEKMKKIFDKFDVNKDGHLDMTELVEWVKALEPELNNNVQSIQFKLSS
FLTPNYYAVLAGNVSLNYIGFTRIYAQGFRNVDHDFNSLGLQFQPNSAIQQVQATPQISN
QVQAMTQVSNQVQATAQVSNQVQATPPVPNQVQATAQVSNQVQATPPVSNQVQATAQISN
QVQAMTQMSNQVQAATRLSQLQATQGRLMTQLSNQVQGGSYSFAGQVNNYRNTLQQAIPT
LNNCRNTVQQGVQTPQLPGQVNNYRNTVQQVNAVAGVKPKGEYNGPDPQLAASLEKEILD
TTPGVRWDDVAGLNEAKRLLQEAVVLPLWMPEYFQGIRRPWRGVLMFGPPGTGKTLLAKA
VATECGTTFLNVSCSSLLAKLYGESERRVRCLFDLARARAPSTIFIDEIDSLCSARGAPG
ENEVSRRVKSELLVQIDGLNNSTNNIAGKPVTVLAATNFPWGLDEALRRRLEKRIYIPLP
DFKSRKELIKINLISITLAPDLDIDQVARRTEGFSGDDLTNICRDASLSGMRRKIAGKNP
DEIKNMSKAEILKIPVMMDDFLEALDKIQPTVSAVDIERHEKWFSEFGST

Transcript Sequence

Gene sequence data has not been registered.